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Broad Institute Inc integrative genomics viewer igv v2.18.4
Integrative Genomics Viewer Igv V2.18.4, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/integrative+genomic+viewer+(igv)/integrative+genomics+viewer/pm40643528-45-18-23
Average 90 stars, based on 1 article reviews
integrative genomics viewer igv v2.18.4 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

RNA Sequencing:

Article Title: AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing
Article Snippet: .. Snapshots of genomic areas were created using the Integrative Genomic Viewer (IGV) of the Broad Institute. (https:// software.broadinstitute.org/software/igv/home) Data quality For both the RNA-seq and ChIP-seq analysis, QC took place. ..

Chromatin Immunoprecipitation:

Article Title: AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing
Article Snippet: .. Snapshots of genomic areas were created using the Integrative Genomic Viewer (IGV) of the Broad Institute. (https:// software.broadinstitute.org/software/igv/home) Data quality For both the RNA-seq and ChIP-seq analysis, QC took place. ..

Sequencing:

Article Title: Beak and feather disease virus (BFDV) persists in tissues of asymptomatic wild Crimson Rosellas
Article Snippet: .. Ampliseq reads were visualised using the Integrative Genomic Viewer (IGV; Broad Institute, University of California)8 and any conflicting base calls between the panels were manually checked to create the consensus sequence for each sample. ..

Article Title: The number of mitochondrial DNA mutations as a genetic feature for hair cycle arrest (alopecia X) in Pomeranian dogs.
Article Snippet: Hair cycle arrest (HCA) is a disorder presenting as noninflammatory symmetrical hair loss, particularly in Pomeranian dogs.. Because of its unknown aetiology and varying response to therapy, the disease has been given numerous names, including alopecia X, and is generally known as HCA.. 4 It is presumed to be a hereditary condition given the strong breed predisposition and younger age of onset.

Article Title: Desmoplastic Infantile Ganglioglioma: A MAPK Pathway-Driven and Microglia/Macrophage-Rich Neuroepithelial Tumor.
Article Snippet: Alamut Visual, version 2.7 rev. .. 2 (Interactive Biosoftware, Rouen, France) and Integrative Genomic Viewer (IGV; Broad Institute, Cambridge, MA) (26) were used to analyze DNA sequence alterations; gene rearrangements were evaluated using IGV with a custom chimeric reference based on predefined preferred gene transcripts. ..

Article Title: Clinical, radiological and molecular characterization of intramedullary astrocytomas
Article Snippet: After alignment, exonic nonsynonymous and splice variants were filtered to exclude those with fewer than 100 reads, present in the population with a minor allele frequency of more than 1% according to the 1000 Genomes project, with mutant allele coverage of fewer than 30 reads or with mutant allele frequency lower than 5% (except for well-known hotspot mutations). .. The final list of mutations was visualized with the Integrative Genomic Viewer (IGV, Broad Institute), and systematic sequencing errors or FFPE artifacts were removed. .. Curated information on variants was obtained from the gnomAD (genome aggregation database, https://gnomad.broadinstitute.org/ ), COSMIC ( http://www.sanger.ac.uk/cosmic ) and CbioPortal ( https://www.cbioportal.org/ ) databases.

Generated:

Article Title: Deletion of the chloroquine resistance transporter gene confers reduced piperaquine susceptibility to the rodent malaria parasite Plasmodium berghei .
Article Snippet: .. The reads that mapped to the region surrounding the PbCRT gene were generated and visualized using the Integrative Genomic Viewer (IGV) developed by the Broad Institute. ..

Formalin-fixed Paraffin-Embedded:

Article Title: Clinical, radiological and molecular characterization of intramedullary astrocytomas
Article Snippet: After alignment, exonic nonsynonymous and splice variants were filtered to exclude those with fewer than 100 reads, present in the population with a minor allele frequency of more than 1% according to the 1000 Genomes project, with mutant allele coverage of fewer than 30 reads or with mutant allele frequency lower than 5% (except for well-known hotspot mutations). .. The final list of mutations was visualized with the Integrative Genomic Viewer (IGV, Broad Institute), and systematic sequencing errors or FFPE artifacts were removed. .. Curated information on variants was obtained from the gnomAD (genome aggregation database, https://gnomad.broadinstitute.org/ ), COSMIC ( http://www.sanger.ac.uk/cosmic ) and CbioPortal ( https://www.cbioportal.org/ ) databases.



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